New sequencing technologies, such as Roche 454, ABI SOLiD and Illumina Solexa, have been increasingly developed at an astounding pace with advantages of reduced time, costs, and efforts. To satisfy the impending need for deciphering the large-scale data generated from next-generation sequencing, a sophisticated software MagicViewer is developed to easily visualize the short reads alignment, identify the genetic variation and associate with the annotation information of reference genome. MagicViewer provides a user-friendly interface in which large-scale short reads and sequencing depth can be easily visualized in zoomable images under user definable color scheme through an operating system-independent manner with the implement of Java language. Meanwhile, it holds a versatile genetic variation annotation and visualization interface, providing details of the query options, functional classifications, subset selection, sequence association and primer design.
Highlights of MagicViewer:
A typical screenshot of MagicViewer:
|Copyright©2009, Institute of Genomic Medicine/Zhejiang Provincial Key Laboratory of Medical Genetics,|
|Wenzhou Medical College, Wenzhou 325035, China.|